Re: namd and Fedora14

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Tue Mar 22 2011 - 08:44:21 CDT

On Tue, Mar 22, 2011 at 9:08 AM, Chris Harrison <charris5_at_gmail.com> wrote:
> If you are only using one node: add ++local, ie,
> charmrun namd2 ++local +p2 input.conf > output.log
>
> If you are using more than one node: install rsh, mpi, etc.

installing rsh is _strongly_ deprecated.

you can use ssh instead (after setting up passwordless login).
if you set and export the environment variable CONV_RSH to the value of "ssh"
it will pick up ssh instead of rsh.

please see the notes.txt file in the NAMD distribution for details.

cheers,
    axel.

>
>
> Best,
> Chris
>
>
> --
> Chris Harrison, Ph.D.
> Theoretical and Computational Biophysics Group
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
>
> char_at_ks.uiuc.edu                          Voice: 217-244-1733
> http://www.ks.uiuc.edu/~char              Fax:   217-244-6078
>
>
> flavio seixas <oivalf_nix_at_yahoo.com> writes:
>> Date: Tue, 22 Mar 2011 05:28:27 -0700 (PDT)
>> From: flavio seixas <oivalf_nix_at_yahoo.com>
>> To: namd-l_at_ks.uiuc.edu
>> Subject: namd-l: namd and Fedora14
>> X-Mailer: YahooMailClassic/11.4.20 YahooMailWebService/0.8.109.295617
>>
>>
>> Hi,
>>
>> I was trying to run a namd simulation in an AMD Athlon X2 Fedora 14 Linux, when I found the following error message:
>>
>> [root_at_NIR set1]# charmrun namd2 +p2 input.conf > output.log
>> Charmrun> Couldn't find rsh program 'rsh'!
>> Charmrun> Couldn't find rsh program 'rsh'!
>> Charmrun> Error 1 returned from rsh (localhost:0)
>>
>> I do not find anything regarding this error on google.
>>
>> Someone have already found an error like this?
>>
>> Regards,
>>
>>
>> Flavio
>>
>>
>>
>>
>>
>>
>
>

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.

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