Coarse_Graining tempetrature

From: Sibel Cakan (sibelc_at_stu.khas.edu.tr)
Date: Fri Jan 28 2011 - 09:12:43 CST

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Dear all
I’m trying to run a residue-based CG MD simulation with NAMD for a system which includes waters, proteins, and a lipid bilayer.I have used some different protocols for stabilization like heating which starts 30K and reaches 323K.When I used lower temperatures like 290-300K,the simulation goes more.I know the natural envirement temperature of protein is 310K but most people is used 323K for CG simulations.I do not know what the correct temperature is,can i use 300K(or low) for CG simulations?

Thanks
Sibel

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