topology for DNA

From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Fri Jan 28 2011 - 06:28:03 CST

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Dear all,

I am attempting to simulate a B-type DNA with the CHARMM force field, using
NAMD. However, the topology files corresponding to deoxyribose are not
directly available (only those for ribose/RNA are available), and hence I am
unable to create suitable psf files.

Has anybody done this successfully with NAMD/psfgen?

Thanks and regards,
Neelanjana Sengupta

• Next message: Ajasja Ljubetič: "Re: Equilibration when splitting an ABF calculation"
• Previous message: Kang Hee Cho: "water content"
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