Local elevation method in NAMD?

From: Cristina Rodríguez (crisrod_at_chem.ubc.ca)
Date: Thu Nov 25 2010 - 16:54:12 CST

Hi there,

I have a protein with a partial NMR experimental structure but contains disordered residues.

I would like to do energy minimization and simulation of the entire protein.

Does NAMD have a similar method as GROMOS (local elevation) for conformational sampling?

Thanks in advance!!!!!


Dra. Cristina Rodríguez-Rodríguez
Department of Chemistry
University of British Columbia
2036 Main Mall
Vancouver, BC
Canada V6T 2A3
Email: crisrod_at_chem.ubc.ca

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