Re: Radius of gyration

From: Jérôme Hénin (jhenin_at_ifr88.cnrs-mrs.fr)
Date: Sun Oct 31 2010 - 04:22:25 CDT

Hi,

If you used NAMD 2.7, it is documented there:
http://www.ks.uiuc.edu/Research/namd/2.7/ug/node49.html#SECTION0001221160000000000000

If you need more information, you will have to make your request more specific.

Best,
Jerome

On 30 October 2010 22:57, Ajasja Ljubetič <ajasja.ljubetic_at_gmail.com> wrote:
> Its in the manual
> http://www.ks.uiuc.edu/Research/vmd/current/ug/node133.html
>
> On Sat, Oct 30, 2010 at 15:43, Dhanashree Khanale <dpkhanale_at_gmail.com>
> wrote:
>>
>> Dear all,
>>
>> I am working on Amyloid beta (42) peptide. I have calculated radius of
>> gyration of the peptide over the trajectory data using NAMD2.7. Can anyone
>> please tell me about how NAMD calculates this? I will be very grateful if
>> some one explains me the calculation.
>>
>> Thank you all,
>>
>>
>> --
>> Dhanashree Prakash Khanale
>> MS SY
>> IISER, Pune
>> Email:dpkhanale_at_gmail.com
>
>

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