From: #SHEPHERDSON IGNATIUS MARK# (SHEP0001_at_ntu.edu.sg)
Date: Sat Feb 06 2010 - 09:56:55 CST
Hi,
I am trying to run parallel simulations on cluster computers. However, when i specify 2 processors to use, I get 2 different processors running serially twice on my log file, giving me 2 results instead of 1. Is there something wrong with my script file?
#!/bin/sh
#$ -V
#$ -cwd
#$ -N NAMD
#$ -pe mpich-eth 2
#/usr/voltaire/mpi/bin/mpirun_ssh -np $NSLOTS -hostfile $TMPDIR/machines ./integral
export
ls -l $TMPDIR/machines
cat $TMPDIR/machines
MPIRUN=/usr/local/openmpi/intel/bin/mpirun
ls -l $MPIRUN
$MPIRUN -np 2 -machinefile $TMPDIR/machines /home/students/FYP_Lim2/Ignatius/NAMD_2.7b1_Source/Linux-x86_64 g++/namd2 /home/students/FYP_Lim2/Ignatius/NAMD_2.7b1_Source/test1/z.conf>z.log
?
Thank you.
Ignatius?
?
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