Symmetry in NAMD, how to achieve during a MD simulation?

From: Wendy González (
Date: Wed Oct 27 2010 - 10:46:03 CDT

Dear NAMD users:

I am running MD simulations of symmetrical structures: potassium channels.
And I do not see the same interactions between the atoms in one monomer
regarding to the other during the MD simulations. Maybe the time of my
dynamics is not enough to see a symmetrical development? Could you give me
more information about this point? About the limit of MD simulation to see
these symmetrical states?

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