question on hydrogen bond

From: Kwee Hong (joyssstan0202_at_gmail.com)
Date: Sun Sep 05 2010 - 22:40:40 CDT

• Next message: dhacademic: "Re: FATAL ERROR: Due to a design error, GlobalMasterServer does not support individual atom requests from multiple global force clients on parallel runs."
• Previous message: henri mone: "FATAL ERROR: Couldn't open DCD file equil0.dcd: No such file or directory"
• Next in thread: Axel Kohlmeyer: "Re: question on hydrogen bond"
• Reply: Axel Kohlmeyer: "Re: question on hydrogen bond"
• Reply: ehenriques_at_qui.uc.pt: "Re: question on hydrogen bond"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hi.

In the namd-tutorial-unix.pdf, it mentioned that explicit hydrogen bond
terms are no longer present in the CHARMM force field and are therefore not
calculated by NAMD. Does this mean that throughout the simulation, hydrogen
bonding are not culculated? So does that mean that I can't inspect the
hydrogen bonding which is important in stabilizing my protein throughout the
simulation?

Thanks.

Regards,
Joyce

• Next message: dhacademic: "Re: FATAL ERROR: Due to a design error, GlobalMasterServer does not support individual atom requests from multiple global force clients on parallel runs."
• Previous message: henri mone: "FATAL ERROR: Couldn't open DCD file equil0.dcd: No such file or directory"
• Next in thread: Axel Kohlmeyer: "Re: question on hydrogen bond"
• Reply: Axel Kohlmeyer: "Re: question on hydrogen bond"
• Reply: ehenriques_at_qui.uc.pt: "Re: question on hydrogen bond"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:54:30 CST