1-4 pair generation

From: Jianhui Tian (jianhuitian_at_gmail.com)
Date: Thu Sep 02 2010 - 13:12:42 CDT

Dear NAMD users,

I am trying to understand how NAMD generate 1-4 pairs for the energy
calculation. I see many discussion about 1-4 scaling treatment. But first,
how does NAMD generate the 1-4 pairs? Does it count all possible 1-4 pairs?
Can 1-4 pairs be generated from the dihedral list if I am using psf
structure file? Thanks a lot.


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