ABF calculations: Jacobian term describing geometry entropy

From: chengh_at_ringo.chem.pitt.edu
Date: Mon Aug 23 2010 - 08:13:37 CDT

Hi all,

"HideJacobian no" is a default implementation in the ABF calcultions.

Does anybody knows the advantage to include this Jacobian term in the PMF
calculations using ABF?

For calculating a 1D PMF along the z-direction, is there any necessary to
include this Jacobian term?

Many thanks,

Mary

Department of chemistry
University of Pittsburgh
Pittsburgh, PA 15260

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