From: Leonardo Herrera (ldhz04_at_yahoo.com.mx)
Date: Mon Jun 14 2010 - 19:44:21 CDT
Hi user's namd
I am runing a minimization with colvar but this don't run. I present my error right away
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colvars: Communicating forces from colvar "cu1503".
colvars: Done communicating forces from colvar "cu1503".
colvars: Writing trajectory file.
PRESSURE: 0 0 0 0 0 0 0 0 0 0
GPRESSURE: 0 0 0 0 0 0 0 0 0 0
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC
TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG
ENERGY: 0 11407.4732 6796.8368 1612.5872 56.3760 -111995.8078 9691.4608 0.0000 0.0000 0.0000
-82431.0737 0.0000 -82431.0737 -82431.0737 0.0000
OPENING EXTENDED SYSTEM TRAJECTORY FILE
MINIMIZER STARTING CONJUGATE GRADIENT ALGORITHM
LINE MINIMIZER Rcolvars: Communicating forces from colvar "cu1503".
colvars: Done communicating forces from colvar "cu1503".
colvars: Writing trajectory file.
PRESSURE: 0 0 0 0 0 0 0 0 0 0
GPRESSURE: 0 0 0 0 0 0 0 0 0 0
ETITLE: TS BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC
TOTAL TEMP POTENTIAL TOTAL3 TEMPAVG
ENERGY: 0 11407.4732 6796.8368 1612.5872 56.3760 -111995.8078 9691.4608 0.0000 0.0000 0.0000
-82431.0737 0.0000 -82431.0737 -82431.0737 0.0000
OPENING EXTENDED SYSTEM TRAJECTORY FILE
MINIMIZER STARTING CONJUGATE GRADIENT ALGORITHM
LINE MINIMIZER REDUCING GRADIENT FROM 6.47241e+08 TO 64724.1
colvars: ----------------------------------------------------------------------
colvars: colvarproxy_namd, step no. 1
colvars: Updating internal data.
colvars: Error: cannot find the total force of atom 9232. Is energy minimization (instead of MD) enabled?
FATAL ERROR: Error in the collective variables module: exiting.
EDUCING GRADIENT FROM 6.47241e+08 TO 64724.1
colvars: ----------------------------------------------------------------------
colvars: colvarproxy_namd, step no. 1
colvars: Updating internal data.
colvars: Error: cannot find the total force of atom 9232. Is energy minimization (instead of MD) enabled?
FATAL ERROR: Error in the collective variables module: exiting.
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Can somebody esplain me how can I solve this?
Thanks a lot.
MenB Leonardo David Herrera Zúñiga POSGRADO EN QUÍMICA UAMI Biofisicoquímica Universidad Autonoma Metropolitana IztapalapaTel. +52 (55) 5804 4674 ldhz04_at_yahoo.com.mx
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