From: jani vinod (genomejani_at_gmail.com)
Date: Wed May 19 2010 - 06:36:09 CDT
hello,
try with GRID-MAT program from lemkul's lab and their other analysis
programs also u can use
regards
vinod
On Wed, May 19, 2010 at 3:52 PM, Saumya <samvygupta_at_gmail.com> wrote:
> Hi all,
>
> I have been working on the simulations of DPPC bilayer. I have reached the
> stage of production run and the graphs for temperature and pressure are
> looking fine. I did the simulations for NPAT ensemble at 300K. I have
> obtained the log file, dcd file and other files.
> Now, I need to calculate/ analyse various parameters concerned with the
> bilayer simulations such as area per lipid, deuterium order parameters etc.
> I am trying to extract information from log file, but m unable to find these
> parameters.
>
> Kindly guide through the process of analysis.
>
> Thank you all.
>
> Regards,
> Saumya Gupta
> Intern, IIT-Delhi
>
>
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