Re: Analysis of Results of only Lipid Bilayer Simulations

From: jani vinod (
Date: Wed May 19 2010 - 06:36:09 CDT

try with GRID-MAT program from lemkul's lab and their other analysis
programs also u can use

On Wed, May 19, 2010 at 3:52 PM, Saumya <> wrote:

> Hi all,
> I have been working on the simulations of DPPC bilayer. I have reached the
> stage of production run and the graphs for temperature and pressure are
> looking fine. I did the simulations for NPAT ensemble at 300K. I have
> obtained the log file, dcd file and other files.
> Now, I need to calculate/ analyse various parameters concerned with the
> bilayer simulations such as area per lipid, deuterium order parameters etc.
> I am trying to extract information from log file, but m unable to find these
> parameters.
> Kindly guide through the process of analysis.
> Thank you all.
> Regards,
> Saumya Gupta
> Intern, IIT-Delhi

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