Calculating interaction energy in NAMD

From: DimitryASuplatov (
Date: Sun Mar 28 2010 - 04:28:52 CDT


I am using namd2.7b1in AMBER mode. I have the input amber topology and
parameter files, output dcd trajectory and log files written with one
How do I calculate energy between two atoms I select for each time
frame during my trajectory?

Thank you.

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:53:57 CST