How to get information of computing time for LJ calculation and pair list generation

From: Hideya Nakamura (
Date: Mon Mar 15 2010 - 12:08:20 CDT

Dear NAMD users,

I am doing NAMD simulation to compare computing performance of NAMD
with our MD implementation.
I want to know the computing time for LJ calculations and pair list
generation in NAMD.
I found some lines in .log file, however, they seem to show computing
performance of whole MD implementation.
Could someone please tell me how to get information of computing time
for each calculation part?? Thanks

Hideya Nakamura, Ph.D.
Post Doctoral Associate
University of Florida, Particle Engineering Research Center (PERC)

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