Re: reading dcd file

From: Mert Gür (gurmert_at_gmail.com)
Date: Tue Jan 26 2010 - 15:46:00 CST

First finish your simulation. Then load your psf and dcd file into VMD. Open
the TKConsole and write the following commands. These should write a pdb
file for each time frame.

for {set i 1} {$i < 3000} {incr i} {

   set sel [atomselect top "all" frame $i ]
   $sel writepdb dcd$i.pdb
}

On Mon, Jan 25, 2010 at 11:20 AM, ipsita basu <ibasu788_at_gmail.com> wrote:

> Dear all,
> My input is given below. I want to write every dcd file in each
> step like dcd1,dcd2 etc in a folder. Please suggest me how I modify my
> script to get the above. Please help.
>
>
> Thanking You
>
> Ipsita Basu
>
> --
> Ipsita Basu
> Research Fellow
> c/o : Dr. Chaitali Mukhopadhyay
> Rajabazar Science College
> 92 APC Road
> Kolkata - 700009

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