MD papers

From: Corey Fugate (
Date: Thu Dec 10 2009 - 15:25:31 CST

        I am getting more comfortable with NAMD. I will use MD simulations
to help describe the structure of our enzyme with substrates bound and
without substrates. I was curious if anyone could give me a reference
to a "good" MD paper, meaning one where the calculations were
appropriate and explained well. I looked at the NAMD website at
papers that reference NAMD, but I'd really like to see what people
believe are good examples, so that I can avoid having my paper
rejected for over-looking details in the calculations.


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