how to save pdb file after "moveby" command in VMD?

From: He Yuhui (
Date: Tue Aug 18 2009 - 21:33:42 CDT

Dear all,

   I selected one segment in my system, and move it a little. Then, I
wanna save the whole system with the updated coordinates of the segment.
I searched the VMD user mannual, but had no idea how to do that:

   mol load psf all.psf pdb all.pdb
   set alpha [atomselect top "segname GOL"]
   set disp 2.0
   $alpha moveby $disp

   Can you tell me how to write that command?

   Thanks and best wishes!

Yuhui He

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