From: Chris Harrison (charris5_at_gmail.com)
Date: Thu Jul 23 2009 - 18:16:08 CDT
try:
charmrun $namddir/namd2 +p$np ++nodelist $nodelist $fconf
:)
Chris
-- Chris Harrison, Ph.D. Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 char_at_ks.uiuc.edu Voice: 217-244-1733 http://www.ks.uiuc.edu/~char Fax: 217-244-6078 On Thu, Jul 23, 2009 at 5:48 PM, Roman Petrenko <rpetrenko_at_gmail.com> wrote: > Dear all, > > is ++nodelist flag obsolete in namd2.7b1? > > for namd2.6 i used the following command to run NAMD, but in namd2.7b1 > in the log file it says "found 3 config files...", where $fconf is > config file > charmrun $namddir/namd2 $fconf ++nodelist $nodelist +p$np > > note, that locally something like: > charmrun -np $np namd2 $fconf > > runs perfectly > -- > Roman Petrenko > Physics Department > University of Cincinnati > >
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