NAMD and new sugar parameter set

From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Mon Apr 20 2009 - 00:42:14 CDT

Is it possible to use NAMD 2.6 (or 2.7b1?) to simulate a system containing
alpha-D-mannose with the new McKerrel's sugar parameter set
top_all35_sugar.inp?

My worry is that NAND will not recognize the longer atom types, e.g.,

ATOM C1 CC3162

Thanks,

      Gianluca

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Gianluca Interlandi, PhD gianluca_at_u.washington.edu
                     +1 (206) 685 4435
                     +1 (206) 714 4303
                     http://artemide.bioeng.washington.edu/

Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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