alchemify with CMAP?

From: Sebastian Stolzenberg (
Date: Thu Apr 16 2009 - 19:11:53 CDT

Dear Jerome,

from a CMAP-equilibrated system, I have prepared a CMAP FEP initial
structure (psf/pdb), using my own CMAP-hybrid-topology definitions (for

In this regard, can "alchemify" handle CMAP? The reason I wanted to
double-check with you is that in your "alchemify" C code, I found
commands, writing out "PSF" as first line, regardless of whether the
first input psf line was "PSF" or "PSF CMAP".

Thanks for your help,

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