PCA Analysis of CGMD

From: Anirban Ghosh (anirbang_at_cdac.in)
Date: Thu Apr 09 2009 - 07:23:04 CDT

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Hi ALL,

I have done a CGMD simulation of a three chain protein system using NAMD. Is
it possible to do a Principle Component Analysis (PCA) of this CGMD run? If
yes, then how? Any suggestion is welcome.

Regards,

Anirban Ghosh

Grade Based Engineer

Bioinformatics Team

Scientific & Engineering Computing Group

Centre for Development of Advanced Computing

Pune, India

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