Correlation matrix of the Ca atoms

From: sripad chandan (sripadchandan_at_gmail.com)
Date: Sun Feb 01 2009 - 22:46:14 CST

Friends,
I want to calculate the Correlation matrix of the Ca atoms (motion) in
a 5 ns simulation done on NAMD, so that the relationship of the
residual and domain motion can be found out.
Is there any possibility of doing it by NAMD/VMD?
It will be very helpful if some one can give a suggestion atleast.
Thanks alot.
Chandan

-- 
Sripad Chandan Patnaik
Research Assistant
National Institute of Technology, Rourkela
+91-9861668977

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