Re: how to save pdb file after "moveby" command in VMD?

From: Joshua Adelman (jadelman_at_berkeley.edu)
Date: Tue Aug 18 2009 - 22:14:18 CDT

Although this is a question for the VMD, not NAMD list. . .

After moving the desired atoms:
set A [atomselect top "all"]

$A writepdb newpdb.pdb

Josh

On Aug 18, 2009, at 7:33 PM, He Yuhui wrote:

> Dear all,
>
> I selected one segment in my system, and move it a little. Then, I
> wanna save the whole system with the updated coordinates of the
> segment.
> I searched the VMD user mannual, but had no idea how to do that:
>
> mol load psf all.psf pdb all.pdb
> set alpha [atomselect top "segname GOL"]
> set disp 2.0
> $alpha moveby $disp
>
>
> Can you tell me how to write that command?
>
> Thanks and best wishes!
>
> Yuhui He
>

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:51:23 CST