peptides on surface

From: Jorgen Simonsen (jorgen589_at_gmail.com)
Date: Wed May 13 2009 - 13:16:51 CDT

Hi all,

I would like to simulate 10 peptides and their interactions on a silver
surface - I am not too interested in the beginning to simulate quantify the
interaction from the surface. I am planning to simply freeze the surface
atoms and add a vdw potential to them as I am mainly interested in the
peptide interactions in the beginning. I have not been able to find any
papers using namd for this - has anybody tried?

Thanks in advance

Best

Jorgen

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