Re: display all frames simultaneously

From: uu zhu (uuzhuzhu_at_gmail.com)
Date: Thu Apr 16 2009 - 22:16:52 CDT

Hi, Sam
VMD has a plugin library (http://www.ks.uiuc.edu/Research/vmd/plugins/). I
found two plugins
"CatDCD $B!=(B Standalone trajectory processing program;
iTrajComp $B!=(B interactive Trajectory Comparison tool"
may meet your need.
Best regards,

On Fri, Apr 17, 2009 at 10:35 AM, Samuel Coulbourn Flores $B2V;3(B <
scflores_at_stanford.edu> wrote:

> Hi Guys,
> I wonder -- is it possible to display all frames of an ensemble, instead of
> "playing" them as a movie? I have each conformation separated with MODEL
> and ENDMDL tags in a PDB formatted file. I want to generate a picture of
> the conformational variability of my molecule. Please let me know how to do
> this if it is possible.
>
> Many thanks
>
> Sam
>
> Samuel Coulbourn Flores, PhD
> Altman Lab
> Department of BioEngineering
> Stanford University
> samuel.flores_at_aya.yale.edu
> 650.644.8416
>
> $B2V;3(B
> $B2J3X<T(B
> $B_at_8J*9)3XIt(B
> $B%9%?%s%U%)0l%IBg3X(B
> $B%9%?%s%U%)0l%I!"%+%j%U%)%k%K%"!"JF9q(B
>
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-- 
WANG
PhD
Division of Bioengineering
School of Chemical & Biomedical Engineering
Nanyang Technological University
Singapore

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