From: Chris Harrison (charris5_at_nd.edu)
Date: Wed Jan 14 2009 - 23:15:20 CST
You could try using the commandline version of psfgen with the command
"mutate". See the NAMD manual.
In general, VMD related questions should be posted to the vmd-l list since
they are more likely to receive a response there.
-- Chris Harrison, Ph.D. Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 char_at_ks.uiuc.edu Voice: 217-244-1733 http://www.ks.uiuc.edu/~char Fax: 217-244-6078 On Sun, Jan 11, 2009 at 5:00 PM, Jianping Lin <jianpingl_at_gmail.com> wrote: > Hi All, > > I am trying to use the mutator in VMD to mutate some certain residues in > one protein (protein.pdb and protein.psf). But the output psf and pdb files > can't keep the original patches (such as NTER, CTER, and TP1). What should I > do? > > Thanks a lot. > > Jianping >
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