Re: Managing Log files

From: Nd S (navdeep79_at_gmail.com)
Date: Wed Sep 24 2008 - 13:46:51 CDT

Hi Alexander

Is there any way out to reduce output information during minimization.

Thanks
Navdeep

On Wed, Sep 24, 2008 at 1:01 PM, Alexander A. Vakhrushev <
makaveli.lcf_at_gmail.com> wrote:

> Hi Navdeep!
> Perhaps your running minimization. In that case NAMD will still output
> information in log file each step.
>
> 2008/9/24, Joshua Adelman <jadelman_at_berkeley.edu>:
> > Hi Navdeep,
> >
> > That should work, and I've never seen it fail to. Is the problem that the
> > output files are still too long or is it that NAMD is really ignoring the
> > outputEnergies parameter?
> >
> > Josh
> >
> >
> >
> >
> > On Sep 24, 2008, at 9:52 AM, Nd S wrote:
> >
> > Hi all
> >
> > While running a MD simulation in NAMD, the log file created is very large
> as
> > the energy values are stored at every step. I added the command
> > "outputEnergies 5000" to output energy into stdout after every 5000 steps
> as
> > per the NAMD manual, but it doesnt work. What's the other way out.
> >
> > Thanks
> > Navdeep
> >
> >
> >
> ------------------------------------------------------------------------------------------------------
> > Joshua L. Adelman
> > Biophysics Graduate Group Lab: 510.643.2159
> > 218 Wellman Hall Fax: 510.642.7428
> > University of California, Berkeley
> > http://nature.berkeley.edu/~jadelman>
> > Berkeley, CA 94720 USA
jadelman_at_berkeley.edu
> >
> ------------------------------------------------------------------------------------------------------
> >
> >
>
>
> --
> Best regards,
>
> Dr. Alexander Vakhrushev
> Institute of Applied Mechanics
> Dep. of Mech. and Phys.-Chem.
> of heterogeneous media
> UB of Russian Academy of Sciences
> 34 T. Baramzinoy St.
> Izhevsk, Russia 426067
> ----------------------------------
> С уважением,
> Вахрушев Александр Александрович
>
> к.ф.-м.н., с.н.с.
> Институт прикладной механики
> Уральского Отделения
> Российской Академии Наук
> 426067, г. Ижевск
> ул. Т. Барамзиной 34
> +7(3412)21-45-83
>

-- 
--------------------------------------------
Gig'em
Navdeep Singh

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