energy minimization help

From: sripad chandan (
Date: Sat Feb 09 2008 - 09:03:50 CST

I am new to NAMD, but know how to work on it.
I have done homology modelling of a protein.
now i want to do energy minimization with NAMD.

1) How can i do it? is there any protocol available?

2) does the pdb file of the protein changes after doing the simulation with

thanking you.

Sripad Chandan Patnaik
National Institute of Technology, Rourkela

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