problems with combine.tcl

From: jose correa (corrjose_at_gmail.com)
Date: Wed Oct 08 2008 - 20:21:12 CDT

Dear all
I prepare pdb/psf for both protein and membrane as well as the
combine.tcl script
So, enter this information: vmd -dispdev text < combine.tcl |tee combine.log
bu it show:

August 1999 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<
>>>>>>> Direct comments to Alexander D. MacKerell Jr. <<<<<<<<<
>>>>>> 410-706-7442 or email: alex,mmiris.ab.umd.edu <<<<<<<<<
and
  \\\\\\\ CHARMM27 All-Hydrogen Lipid Topology File ///////
  \\\\\\\\\\\\\\\\\\ Developmental /////////////////////////
              Alexander D. MacKerell Jr.
                     August 1999
 All comments to ADM jr. email: alex,mmiris.ab.umd.edu
              telephone: 410-706-7442

Created by CHARMM version 27 1
clearing structure, preserving topology and aliases
reading structure from psf file membrane-80.psf
Error processing dihedrals

MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.

MOLECULE MISSING! Use resetpsf to start over.

MOLECULE MISSING! Use resetpsf to start over.

MOLECULE MISSING! Use resetpsf to start over.

temp

MOLECULE MISSING! Use resetpsf to start over.

MOLECULE MISSING! Use resetpsf to start over.
Couldn't open psf file temp.psf
ERROR) Could not read file temp.psf
Unable to load structure file temp.psf
extra characters after close-quote
can't read "lseg": no such variable
can't read "selover": no such variable
can't read "resover": no such variable
invalid command name "}"

MOLECULE MISSING! Use resetpsf to start over.

MOLECULE MISSING! Use resetpsf to start over.
Info) VMD for LINUX, version 1.8.6 (April 6, 2007)
Info) Exiting normally.

Do you have any suggestion?

Best wishes
Jose Correa

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