How to compute interaction energies between individual amino acid residues

From: Jemmy Hu (j8hu_at_sciborg.uwaterloo.ca)
Date: Tue Sep 30 2008 - 11:24:33 CDT

Hello,

We have a NAMD user who asked this question:

"When using the NAMD simulation software, is there a way to compute
interaction energies between individual amino acid residues, and if
so, how do I do this?"

a sample input file is appreciated.

Thanks,
Jemmy

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