Re: Dihedral angle calculation over the trajectories

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Wed Aug 13 2008 - 10:24:59 CDT

Hi Sunita,

You can load the trajectory in vmd and use
set dihedlist [measure dihed {atom1 atom2 atom3 atom4} frame all]
or some permutation of that to get a list containing a dihedral of
interest over all frames. See
http://www.ks.uiuc.edu/Research/vmd/current/ug/node124.html for more on
these functions.
Best,
Peter

sunita gupta wrote:
> Hello all
>
> Does anyone know how to calculate dihedral angles over the trajectories?
>
> Thanks
>
> --
> SUNITA GUPTA
>

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