build charm++ and namd

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Thu Jul 31 2008 - 05:06:44 CDT

Dear NAMD users,

I have a problem building charm++ (version 6.0) and namd on a cluster
with AMD Barcelona chips using intel 10.1.015 compiler.
My build command is:
./build charm++ net-linux-amd64 icc10amd tcp --no-build-shared
-DCMK_OPTIMIZE=1 -O3 2>&1 | tee build.log

Although the build appeared successful (megatest passed), I got the
error attached during the build.

Is this something I should worry about? Has anybody seen this before ?

Thanks

Best wishes
vlad

-- 
----------------------------------------------------------------------------
Dr. Vlad Cojocaru
EML Research gGmbH
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg
Tel: ++49-6221-533266
Fax: ++49-6221-533298
e-mail:Vlad.Cojocaru[at]eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/
----------------------------------------------------------------------------
EML Research gGmbH
Amtgericht Mannheim / HRB 337446
Managing Partner: Dr. h.c. Klaus Tschira
Scientific and Managing Director: Prof. Dr.-Ing. Andreas Reuter
http://www.eml-r.org
----------------------------------------------------------------------------

./bin/charmc -DCMK_OPTIMIZE=1 -O3 -nobs -c pup_f.f90 && ../bin/charmc -DCMK_OPTIMIZE=1 -O3 -nobs -cpmod ../include pupmod.M || touch pup_f.o
fortcom: Warning: Bad # preprocessor line
fortcom: Warning: Bad # preprocessor line
fortcom: Warning: Bad # preprocessor line
fortcom: Warning: Bad # preprocessor line
fortcom: Error: pup_f.f90, line 6: Syntax error, found '>' when expecting one of: => = . ( : %
cat > pup_f.f90 << END_OF_HEADER
----^
fortcom: Error: pup_f.f90, line 6: Syntax error, found '<' when expecting one of: ( <IDENTIFIER> <CHAR_CON_KIND_PARAM> <CHAR_NAM_KIND_PARAM> <CHARACTER_CONSTANT> <INTEGER_CONSTANT> ...
cat > pup_f.f90 << END_OF_HEADER
-----------------^
fortcom: Warning: pup_f.f90, line 80: Bad # preprocessor line
#
-^
fortcom: Warning: pup_f.f90, line 81: Bad # preprocessor line
# Create pup routines for each data type:
--^
fortcom: Warning: pup_f.f90, line 82: Bad # preprocessor line
# The "p" routines just copy the data.
--^
fortcom: Warning: pup_f.f90, line 83: Bad # preprocessor line
# The "ap" routines also allocate and free the buffer.
--^
fortcom: Warning: pup_f.f90, line 84: Bad # preprocessor line
#
-^
fortcom: Error: pup_f.f90, line 78: Syntax error, found END-OF-STATEMENT when expecting one of: => = . ( : %
END_OF_HEADER
-------------^
fortcom: Error: pup_f.f90, line 85: Invalid character_kind_parameter. No underscore
for data in "int/i/integer" "short/s/integer(kind=2)" "char/c/character" "real/r/real(kind=4)" "double/d/real(kind=8)"
---------------------------^
fortcom: Error: pup_f.f90, line 85: Syntax error, found IDENTIFIER 'DATA' when expecting one of: => = . ( : %
for data in "int/i/integer" "short/s/integer(kind=2)" "char/c/character" "real/r/real(kind=4)" "double/d/real(kind=8)"
----^
fortcom: Error: pup_f.f90, line 87: Unrecognized token '`' skipped
        pupname=`echo $data | awk -F/ '{print $1}'`
----------------^
fortcom: Error: pup_f.f90, line 87: Unrecognized token '|' skipped
        pupname=`echo $data | awk -F/ '{print $1}'`
----------------------------^
fortcom: Error: pup_f.f90, line 87: Unrecognized token '`' skipped
        pupname=`echo $data | awk -F/ '{print $1}'`
--------------------------------------------------^
fortcom: Error: pup_f.f90, line 87: Syntax error, found IDENTIFIER '$DATA' when expecting one of: .EQV. .NEQV. .XOR. .OR. .AND. .LT. < .LE. <= .EQ. == .NE. /= .GT. > ...
        pupname=`echo $data | awk -F/ '{print $1}'`
----------------------^
fortcom: Error: pup_f.f90, line 88: Unrecognized token '`' skipped
        cname=`echo $data | awk -F/ '{print $2}'`
--------------^
fortcom: Error: pup_f.f90, line 88: Unrecognized token '|' skipped
        cname=`echo $data | awk -F/ '{print $2}'`
--------------------------^
fortcom: Error: pup_f.f90, line 88: Unrecognized token '`' skipped
        cname=`echo $data | awk -F/ '{print $2}'`
------------------------------------------------^
fortcom: Error: pup_f.f90, line 88: Syntax error, found IDENTIFIER '$DATA' when expecting one of: .EQV. .NEQV. .XOR. .OR. .AND. .LT. < .LE. <= .EQ. == .NE. /= .GT. > ...
        cname=`echo $data | awk -F/ '{print $2}'`
--------------------^
fortcom: Error: pup_f.f90, line 89: Unrecognized token '`' skipped
        fname=`echo $data | awk -F/ '{print $3}'`
--------------^
fortcom: Error: pup_f.f90, line 89: Unrecognized token '|' skipped
        fname=`echo $data | awk -F/ '{print $3}'`
--------------------------^
fortcom: Error: pup_f.f90, line 89: Unrecognized token '`' skipped
        fname=`echo $data | awk -F/ '{print $3}'`
------------------------------------------------^
fortcom: Error: pup_f.f90, line 89: Syntax error, found IDENTIFIER '$DATA' when expecting one of: .EQV. .NEQV. .XOR. .OR. .AND. .LT. < .LE. <= .EQ. == .NE. /= .GT. > ...
        fname=`echo $data | awk -F/ '{print $3}'`
--------------------^
fortcom: Error: pup_f.f90, line 90: Invalid character_kind_parameter. No underscore
        echo "Making pup routines for data type $pupname/$cname/$fname"
-----------------------------------------------------------------------^
fortcom: Error: pup_f.f90, line 90: Syntax error, found CHARACTER_CONSTANT 'Making pup routines for data type $pupname/$cname/$fname' when expecting one of: => = . ( : %
        echo "Making pup routines for data type $pupname/$cname/$fname"
-------------^
fortcom: Error: pup_f.f90, line 91: Syntax error, found '>' when expecting one of: => = . ( : %
        cat >> pup_f.f90 << END_OF_DATATYPE
------------^
fortcom: Error: pup_f.f90, line 94: Unrecognized token '{' skipped
      subroutine p${cname}(p, i)
-------------------^
fortcom: Error: pup_f.f90, line 94: Unrecognized token '}' skipped
      subroutine p${cname}(p, i)
-------------------------^
fortcom: Error: pup_f.f90, line 94: Syntax error, found ')' when expecting one of: =
      subroutine p${cname}(p, i)
-------------------------------^
fortcom: Error: pup_f.f90, line 96: Syntax error, found ',' when expecting one of: => = . ( : %
        $fname, intent(inout) :: i
--------------^
fortcom: Error: pup_f.f90, line 97: Unrecognized token '{' skipped
        call fpup_${pupname}(p, i)
-------------------^
fortcom: Error: pup_f.f90, line 97: Unrecognized token '}' skipped
        call fpup_${pupname}(p, i)
---------------------------^
fortcom: Error: pup_f.f90, line 97: Syntax error, found IDENTIFIER 'PUPNAME' when expecting one of: ( <END-OF-STATEMENT> ;
        call fpup_${pupname}(p, i)
--------------------^
fortcom: Error: pup_f.f90, line 100: Unrecognized token '{' skipped
      subroutine p${cname}a1d(p, arr)
-------------------^
fortcom: Error: pup_f.f90, line 100: Unrecognized token '}' skipped
      subroutine p${cname}a1d(p, arr)
-------------------------^
fortcom: Error: pup_f.f90, line 100: Syntax error, found IDENTIFIER 'A1D' when expecting one of: (
      subroutine p${cname}a1d(p, arr)
--------------------------^
fortcom: Severe: Too many errors, exiting
compilation aborted for pup_f.f90 (code 1)
Fatal Error by charmc in directory /home/cojocaru/apps/charm-6.0-net/net-linux-amd64-tcp-icc10amd/tmp
   Command ifort -auto -fPIC -I../bin/../include -DCMK_OPTIMIZE=1 -O3 -c pup_f.f90 -o pup_f.o returned error code 1
charmc exiting...
./bin/charmc -DCMK_OPTIMIZE=1 -O3 -nobs -o ../lib/libconv-utilf.a pup_f.o || touch ../lib/libconv-utilf.a
Fatal Error by charmc in directory /home/cojocaru/apps/charm-6.0-net/net-linux-amd64-tcp-icc10amd/tmp
   pup_f.o: file not recognized: File truncated

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