Re: molefacture in vmd

From: Peter Freddolino (
Date: Wed Jun 04 2008 - 17:27:06 CDT

Hi Subhashis,
You should be able to build the molecule from scratch using commands
from the Build menu -- first pick a base fragment and then start
replacing hydrogens with other fragments to build up what you want.
However, this shouldn't be an issue because you should be able to read
the material studio .pdb just fine. What happens when you try to open
your pdb file in vmd?

Subhashis Biswas wrote:
> Hi,
> I am trying to develop a dye structure Ru 620-1H3TBA using molefacture
> in the vmd program. I am unable to do it. I transfered the structure
> from material studio as .pdb file, but when I try to open it in vmd, i
> cannot see the molecule. Also if anyone can suggest if I can build the
> dye molecule from scratch using molefacture.
> Thanks
> regards,
> Subhashis

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