Re: Building Namd on a linux cluster.

From: Alexandre A. Vakhrouchev (makaveli.lcf_at_gmail.com)
Date: Fri May 30 2008 - 00:38:25 CDT

Hi)
Please post several lines before error message. It should show which library
is missing.

2008/5/30 Khaled Barakat <kbarakat_at_phys.ualberta.ca>:

>
> Hello,
>
> I am trying to build charm and NAMD on an AMD Opteron linux cluster with a
> high speed Infiniband
> (for MPI).
> I used the following command to build charm++:
>
> ./build charm++ mpi-linux pgcc --incdir /usr/local/mpich2/include --libdir
> /usr/local/mpich2/lib
>
> the command goes through and I get the message:
>
> charm++ built successfully.
> Next, try out a sample program like
> tests/charm++/simplearrayhello
>
> However, when I tried to run the test by typing: make Hello
> I got the error:
>
> Fatal Error by charmc in directory /home/kbarakat/NAMD_2.6_Source/charm-
> 5.9/tests/charm++/simplearrayhello
> Command pgCC --instantiate=used -L/usr/local/mpich2/lib
> -L/usr/local/mpich2/lib -o hello -
> L../../../bin/../lib -I../../../bin/../include
> ../../../bin/../lib/libldb-rand.o hello.o moduleinit9346.o
> ./../../bin/../lib/libmemory-default.o
> ../../../bin/../lib/libthreads-default.o -lck -lconv-cplus-y -
> lconv-core -lconv-util -lckqt -lmpich -Wl,-ldl -lm returned error code 2
> charmc exiting...
>
> I am wondering if any one faced this problem before.
>
> Your help is appraciated
> khaled
>
>
>
>
>
>

-- 
Best regards,
Dr. Alexander Vakhrushev
Institute of Applied Mechanics
Dep. of Mech. and Phys.-Chem.
of heterogeneous mediums
UB of Russian Academy of Sciences
34 T. Baramzinoy St.
Izhevsk, Russia 426067
----------------------------------
С уважением,
Вахрушев Александр Александрович
к.ф.-м.н., с.н.с.
Институт прикладной механики
Уральского Отделения
Российской Академии Наук
426067, г. Ижевск
ул. Т. Барамзиной 34
+7(3412)21-45-83

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