From: J T (jtibbitt_at_odu.edu)
Date: Wed May 23 2007 - 21:49:02 CDT
Try the tutorials on the VMD and NAMD website. The first VMD
tutorial is good and will show you how to solvated your pdb.
On May 23, 2007, at 5:05 PM, Kayode Karunwi wrote:
> Hi everyone,
> I'm new to using namd and tried practicing on some small pdb file,
> alanine. This is most likely easy for everyone on this forum.
> How do you solvate this molecule and optimize it's energy so it's
> enclosed in a water sphere? Attached are the files I modified but
> feel free to start with the original pdb file, run through and send
> back to me at k.karunwi_at_gmail.com
> Thanks in anticipation of your help.
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:46:20 CST