psfgen for pre-equilibrated membrane bilayer

From: Myunggi Yi (
Date: Wed Dec 19 2007 - 18:47:10 CST

Dear namd users,

I'm a beginner of NAMD.
I'm trying to prepare psf file for pre-equilibrated popc membrane bilayer
(128; 64 lipids each layer).

Should I split all lipid molecules using vmd?
I want to make three segments (fragments) with upper leaflet and lower
leaflet and water molecules.
How can I do this?

Have a nice day.

Best wishes,
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: (850) 645-1334

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