nonbonded interactions

From: Xu, Jiancong (xuj1_at_ornl.gov)
Date: Fri Dec 07 2007 - 13:34:46 CST

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Hi all,

This might be a silly question, but I looked all over the manual and tutorial, still couldn't find the answer. In the PSF file generated by VMD, the number of nonbonded interactions is almost always zero except in alchemical transformation. And I'm wondering why it's that and where the VDW interactions come from in NAMD.

Thanks,
Jiancong

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jiancong Xu, Ph.D.
Center for Molecular Biophysics
 Building 5700 MS6164
Oak Ridge National Laboratory
P.O.Box 2008
Oak Ridge TN 37830, USA.
Tel: (865) 241-1537
Email: jia_at_ornl.gov
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