Re: NAMD cg configuration file

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Mon Oct 29 2007 - 07:36:23 CDT

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Hi Alexe,
could you be more specific about what sort of CG model you're using?
Since you have a CG model, you should already have an idea of what
cutoff, timestep, and such you want to use, so you should just be able
to set your simulation parameters
(http://www.ks.uiuc.edu/Research/namd/2.6/ug/node26.html) accordingly.
If you have any more specific questions about what you're having trouble
setting up, we may be able to help.
Peter

Alexe Bojovschi wrote:
> Hi,
>
> Can anyone let me know where I can find a sample configuration file
> for CG.
> I got my CG model , (cg_protein.pdb, cg_protein.pbs) but I don't know
> how to adapt the namd.conf file for my simulation.
> Any suggestion will be appreciated.
>
> Cheers,
> Alexe
>
>

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