Initial and final state fix MD

From: Ugur Akgun (
Date: Thu Oct 04 2007 - 16:21:25 CDT

Dear All;
I have two positions of a small peptide. I want to simulate the steps between .
Is there any way to run MD simulation with known beginning and end configurations?
This is not like pulling few atoms..
Can NAMD do this?
I'd really appreciate any help.
Thanks a lot.

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