From: Adam Fraser (adam.n.fraser_at_gmail.com)
Date: Mon Aug 06 2007 - 10:25:29 CDT
Hello,
I was wondering if it is possible to apply an attractive harmonic potential
between specific atoms in 2 molecules with namd.
The goal is to create a harmonic bond between two hydrocarbons.
Could "targeted MD" be used to this end, and if so, how?
Any help would be much appreciated.
thanks
-Adam
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