How to build the psf file and the parameter file of a ligand

Date: Mon Jul 16 2007 - 03:08:33 CDT

&nbsp; <p>Hi, all</p><p>&nbsp;</p><p>I want to run a MD of a protein-ligand complex with NAMD. But I don't know how to build the</p><p>&nbsp;psf file and the parameter file of the ligand in the system. I have never done it. What should </p><p>I do? Is there any plugin or soft that can generate the files and how? </p><p>Can anybody give me some advises? Thanks</p><p>&nbsp;</p><p>Paul Tao</p>

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