how to simulate sugars

From: Richard Casey (
Date: Sun May 27 2007 - 12:21:26 CDT


We're using NAMD for protein-sugar simulations. When using psfgen, we get various error messages, often something like "unknown residue type TRE", etc. I think we need a topology file that includes sugars, is that correct? If so, does anyone know where to get such topology files?

Richard Casey

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