From: JC Gumbart (gumbart_at_ks.uiuc.edu)
Date: Tue Mar 27 2007 - 14:17:46 CDT
The PDB should contain the transformation matrices needed to
replicate the tetramer (remark 350 I think). Use it like this (I
think there aren't any mistakes...):
set M {{ 1 0 0 0} {0 1 0 0} {0 0 1 0}}
set sel [atomselect top "all"]
$sel move $M
$sel writepdb AQP-x.pdb
You need to write a pdb with the new coordinates after each time you
do this. Then you can put them all together in one pdb.
Also, this is really a VMD question, so in the future, direct
questions like this to VMD-L where you will likely get a better
answer anyway.
On Mar 27, 2007, at 7:22 AM, xiaojing gong wrote:
> Dear all,
> I used the software named Swiss-PdbViewer to create the
> tetramer of AQP.But now I want to learn to use the transformation
> matrix in VMD to obtain the tetramer. Does anyone have experience
> in it and want to tell me how to do that? Thanks a lot!
>
> Mp3疯狂搜-新歌热歌高速下
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:44:30 CST