From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Fri Feb 16 2007 - 19:16:59 CST
I'm running NAMD_2.6b1_Linux-i686 on a linux cluster with gigabit. I use
the command line:
~/NAMD/NAMD_2.6b1_Linux-i686/charmrun +p9 ++ppn 2 ++nodelist machines.list
~/NAMD/NAMD_2.6b1_Linux-i686/namd2 inputs/config_heat.namd
My file machines.list contains the entry:
group main ++shell /usr/bin/ssh
host efaisto1
host efaisto1
host efaisto2
host efaisto2
host efaisto3
host efaisto3
host efaisto4
host efaisto4
host efaisto5
I get on standard output 10 lines with the warning:
Warning> Invalid cpus 2 in nodelist ignored.
However, the simulation is running fine. What does this warning mean? What
shall I do to avoid it?
Thanks a lot,
Gianluca
-----------------------------------------------------
Dr. Gianluca Interlandi gianluca_at_u.washington.edu
+1 (206) 685 4435
+1 (206) 714 4303
http://biocroma.unizh.ch/gianluca/
Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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