Hexagonal boundary conditions

From: Harindar Keer (hkeer_at_uci.edu)
Date: Mon Jul 31 2006 - 13:23:50 CDT

Dear All,

     I started with hexagonal patch of membrane, on minimizing the
system, it takes the shape of parallelogram. I was wondering if this is
the way NAMD takes care of hexagonal BCs. For cell basis vectors, I am
using non-orthogonal vectors. It would be great if any one can confirm
it or suggests how hexagonal BCs should be setup.


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