From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Thu May 18 2006 - 09:44:11 CDT
Things should be ok with just the psf and dcd loaded. Does the VMD Main
window display a nonzero number of frames after you load the dcd?
Also, have you downloaded the rmsd script?
Peter
Ayse Ozlem Sezerman wrote:
>Hi,
>
>Thanks for your reply.
>
>I've looked at the analysis part in the NAMD tutorial. There in the first step
>it written to load the psf file and then the dcd file. It doesnot mention
>anything about the pdb file.
>
>Best regards
>
>Ozlem
>
>
>
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