From: ayhan duzgun (ayhan_duzgun_at_yahoo.com)
Date: Wed Apr 26 2006 - 21:24:13 CDT
I have gone through the tutorial building gramicidin A and have run a simulation and it works. But right now I need to place a fixed ion manually to a certain position do not need the system to be neutral.
unfortunately I am not familiar enough to change all variables in the coordinate,velocity, etc. files that are required as an input to the NAMD simulation.
could you help me with that.
thanks
ayhan
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