From: Dong Luo (us917_at_yahoo.com)
Date: Fri Mar 10 2006 - 11:11:03 CST
Why not just use the plugin rmsdtt for VMD?
--- Richard Wood <rwoodphd_at_yahoo.com> wrote:
> Hi all,
> Is there a way to align all the frames of a
> dynamics calculation using VMD? I know that one can
> open two or more molecule files and do an alingment
> on them, but I need to know if I can do this with a
> dynamics trajectory having 100 frames or more. I
> need to align all the structures and then calculate
> RMSD's. Any help will be most appreciated.
> Richard L. Wood, Ph. D.
> Computational Chemist
> Cockeysville, MD 21030
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