volume exclusion

From: Kyle Gustafson (kgustaf_at_umd.edu)
Date: Thu Mar 09 2006 - 09:51:30 CST

Dear list,

Is there a straightforward way to tell NAMD that two bonds cannot
intersect? The linear bonds between two atoms act like springs, but
they don't have any spatial volume. I don't want my bonds to overlap
for my application.



Kyle Gustafson
PhD Student
Department of Physics
University of Maryland

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