From: Christophe Combet [PBIL/IBCP/CNRS] (c.combet_at_ibcp.fr)
Date: Thu Mar 09 2006 - 05:26:24 CST
Helllo,
I tried to compile with the pthreads options as indicated but still
have problems.
gdb ./namd2
(gdb) r src/alanin
Info: Entering startup phase 8 with 2041 kB of memory in use.
Program received signal SIG32, Real-time event 32.
0x0827178b in __pthread_sigsuspend ()
(gdb) bt
#0 0x0827178b in __pthread_sigsuspend ()
#1 0x08270a01 in __pthread_wait_for_restart_signal ()
#2 0x08270c63 in pthread_create ()
#3 0x081e3ab9 in CthCreate ()
#4 0x08101164 in Controller::run ()
#5 0x08162682 in Node::run ()
#6 0x081e97d0 in CkDeliverMessageFree ()
#7 0x081ea67b in _processHandler ()
#8 0x0822260d in CmiHandleMessage ()
#9 0x08222796 in CsdScheduleForever ()
#10 0x0822271a in CsdScheduler ()
#11 0x0804e3d2 in BackEnd::suspend ()
#12 0x081913ba in ScriptTcl::run ()
#13 0x0804b5ba in main ()
(gdb)
gdb mpirun
(gdb) r -np 3 ./namd2 src/alanin
Info: Finished startup with 2038 kB of memory in use.
------------------------------------------------------------------------
-----
One of the processes started by mpirun has exited with a nonzero exit
code. This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.
PID 31999 failed on node n0 (127.0.0.1) due to signal 9.
------------------------------------------------------------------------
-----
Program exited with code 011.
(gdb) bt
No stack.
(gdb)
glibc-devel-2.3.2-95.37
nptl-devel-2.3.2-95.37
glibc-2.3.2-95.37
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